INDUCE-seq Results
EMX1_Cas9_4h
Nominations
| Chr | Start | End | Count | Rationale | Guide name | Reproducibility | Count (EMX1 cas9 4h rep1) | Count (EMX1 cas9 4h rep2) | Count (EMX1 cas9 4h rep3) | EMX1 Cas9 mismatches | Intersect with genes | Intersect with repeat mask | Width | Plus count | Minus count | Count ratio | Normalised sample to control ratio | Percent id to EMX1 Cas9 | Break site probability scores |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr2 | 72933868 | 72933870 | 95 | frequency-based,homology-based | EMX1_Cas9 | 3/3 | 33 | 42 | 20 | 0 | EMX1,ENSG00000278060 | 2 | 57 | 38 | 1.50 | 100.0 | 100.00 | ||
| chr5 | 45358964 | 45358965 | 20 | frequency-based,homology-based | EMX1_Cas9 | 3/3 | 3 | 15 | 2 | 2 | HCN1 | LTR49 | 1 | 7 | 13 | 1.86 | 91.3 | 100.00 | |
| chr14 | 75489025 | 75489028 | 6 | frequency-based | 2/3 | 3 | 3 | 0 | 3 | 4 | 2 | 2.00 | 5.00 | 56.52 | 100.00 | ||||
| chr15 | 43817564 | 43817565 | 3 | homology-based | EMX1_Cas9 | 3/3 | 1 | 1 | 1 | 3 | MFAP1 | 1 | 3 | 0 | 86.96 | 0.00 | |||
| chr3 | 19205780 | 19205782 | 2 | homology-based | EMX1_Cas9 | 2/3 | 1 | 0 | 1 | 6 | KCNH8 | L2c,L1PB1 | 2 | 0 | 2 | 73.91 | 0.00 | ||
| chr5 | 9227049 | 9227050 | 2 | homology-based | EMX1_Cas9 | 2/3 | 0 | 1 | 1 | 3 | SEMA5A | (AT)n | 1 | 1 | 1 | 1.00 | 86.96 | 0.00 | |
| chr8 | 127789011 | 127789012 | 2 | homology-based | EMX1_Cas9 | 1/3 | 0 | 2 | 0 | 3 | 1 | 2 | 0 | 86.96 | 0.00 | ||||
| chr11 | 118924225 | 118924226 | 2 | homology-based | EMX1_Cas9 | 2/3 | 0 | 1 | 1 | 6 | BCL9L | 1 | 2 | 0 | 73.91 | 0.00 | |||
| chr15 | 92337937 | 92337938 | 2 | homology-based | EMX1_Cas9 | 2/3 | 1 | 1 | 0 | 6 | MLT1D | 1 | 2 | 0 | 73.91 | 0.00 | |||
| chr7 | 122955941 | 122955942 | 1 | homology-based | EMX1_Cas9 | 1/3 | 0 | 1 | 0 | 4 | MLT1E2 | 1 | 0 | 1 | 82.61 | 0.00 | |||
| chr22 | 39802994 | 39802995 | 1 | homology-based | EMX1_Cas9 | 1/3 | 0 | 1 | 0 | 4 | ENTHD1 | L2a | 1 | 0 | 1 | 82.61 | 0.00 |
Breaksite Plots
Mismatch Plots
EMX1_Cas9_4h EMX1_Cas9
EMX1_Cas9_8h
Nominations
| Chr | Start | End | Count | Rationale | Guide name | Reproducibility | Count (EMX1 cas9 8h rep1) | Count (EMX1 cas9 8h rep2) | Count (EMX1 cas9 8h rep3) | EMX1 Cas9 mismatches | Intersect with genes | Intersect with repeat mask | Width | Plus count | Minus count | Count ratio | Normalised sample to control ratio | Percent id to EMX1 Cas9 | Break site probability scores |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr2 | 72933868 | 72933869 | 44 | frequency-based,homology-based | EMX1_Cas9 | 3/3 | 16 | 18 | 10 | 0 | EMX1,ENSG00000278060 | 1 | 31 | 13 | 2.38 | 100.0 | 100.00 | ||
| chr5 | 45358963 | 45358965 | 18 | frequency-based,homology-based | EMX1_Cas9 | 3/3 | 10 | 4 | 4 | 2 | HCN1 | LTR49 | 2 | 5 | 13 | 2.60 | 91.3 | 100.00 | |
| chr8 | 140636262 | 140636265 | 7 | frequency-based | 3/3 | 3 | 2 | 2 | ERICD | 3 | 3 | 4 | 1.33 | 43.48 | 96.88 | ||||
| chr2 | 189412614 | 189412617 | 6 | frequency-based | 3/3 | 3 | 1 | 2 | 3 | 5 | 1 | 5.00 | 56.52 | 87.98 | |||||
| chr8 | 100827229 | 100827231 | 6 | frequency-based | 3/3 | 1 | 4 | 1 | 2 | 6 | 0 | 3.47 | 47.83 | 87.98 | |||||
| chr9 | 36407284 | 36407285 | 6 | frequency-based | 3/3 | 2 | 3 | 1 | RNF38 | 1 | 6 | 0 | 47.83 | 87.98 | |||||
| chr15 | 80970257 | 80970260 | 6 | frequency-based | 2/3 | 0 | 1 | 5 | MESD | 3 | 3 | 3 | 1.00 | 47.83 | 87.98 | ||||
| chr20 | 34303452 | 34303454 | 6 | frequency-based | 3/3 | 4 | 1 | 1 | AHCY | 2 | 1 | 5 | 5.00 | 52.17 | 87.98 | ||||
| chr1 | 87648196 | 87648199 | 5 | frequency-based | 3/3 | 2 | 1 | 2 | PKN2-AS1 | MIRc | 3 | 2 | 3 | 1.50 | 52.17 | 53.36 | |||
| chr2 | 196066941 | 196066945 | 5 | frequency-based | 3/3 | 2 | 1 | 2 | DNAH7 | 4 | 1 | 4 | 4.00 | 43.48 | 53.36 | ||||
| chr5 | 132489598 | 132489601 | 5 | frequency-based | 2/3 | 0 | 2 | 3 | ENSG00000283782,IRF1 | 3 | 4 | 1 | 4.00 | 47.83 | 53.36 | ||||
| chr5 | 143435472 | 143435476 | 5 | frequency-based | 2/3 | 3 | 0 | 2 | NR3C1 | GA-rich | 4 | 4 | 1 | 4.00 | 65.22 | 53.36 | |||
| chr12 | 3873554 | 3873557 | 5 | frequency-based | 3/3 | 2 | 2 | 1 | PARP11-AS1 | 3 | 1 | 4 | 4.00 | 66.67 | 53.36 | ||||
| chr12 | 105053198 | 105053200 | 5 | frequency-based | 2/3 | 3 | 2 | 0 | NOPCHAP1,ALDH1L2 | 2 | 1 | 4 | 4.00 | 43.48 | 53.36 | ||||
| chr15 | 43817564 | 43817565 | 5 | frequency-based,homology-based | EMX1_Cas9 | 3/3 | 1 | 2 | 2 | 3 | MFAP1 | 1 | 4 | 1 | 4.00 | 86.96 | 53.36 | ||
| chr17 | 2401044 | 2401046 | 5 | frequency-based | 2/3 | 2 | 3 | 0 | MNT | (CTCC)n | 2 | 2 | 3 | 1.50 | 69.57 | 53.36 | |||
| chr17 | 38322332 | 38322335 | 5 | frequency-based | 2/3 | 3 | 2 | 0 | MRPL45 | 3 | 1 | 4 | 4.00 | 56.52 | 53.36 | ||||
| chr17 | 58659569 | 58659572 | 5 | frequency-based | 2/3 | 0 | 3 | 2 | TEX14 | 3 | 2 | 3 | 1.50 | 56.52 | 53.36 | ||||
| chr5 | 9227049 | 9227051 | 3 | homology-based | EMX1_Cas9 | 2/3 | 0 | 2 | 1 | 3 | SEMA5A | (AT)n | 2 | 3 | 0 | 86.96 | 0.15 | ||
| chr6 | 9118565 | 9118566 | 2 | homology-based | EMX1_Cas9 | 2/3 | 0 | 1 | 1 | 3 | HULC | 1 | 1 | 1 | 1.00 | 86.96 | 0.00 | ||
| chr11 | 86447260 | 86447262 | 2 | homology-based | EMX1_Cas9 | 2/3 | 1 | 0 | 1 | 6 | ENSG00000254733,ME3 | 2 | 1 | 1 | 1.00 | 73.91 | 0.00 | ||
| chr8 | 127789011 | 127789012 | 1 | homology-based | EMX1_Cas9 | 1/3 | 1 | 0 | 0 | 3 | 1 | 0 | 1 | 86.96 | 0.00 | ||||
| chr17 | 46192774 | 46192775 | 1 | homology-based | EMX1_Cas9 | 1/3 | 0 | 0 | 1 | 4 | KANSL1 | (GAGCAG)n | 1 | 0 | 1 | 82.61 | 0.00 |
Breaksite Plots
Mismatch Plots
EMX1_Cas9_8h EMX1_Cas9
HPRT1_Cas12a_4h
Nominations
| Chr | Start | End | Count | Rationale | Guide name | Reproducibility | Count (HPRT1 cas12a 4h rep1) | Count (HPRT1 cas12a 4h rep2) | Count (HPRT1 cas12a 4h rep3) | HPRT1 Cas12a mismatches | Intersect with genes | Intersect with repeat mask | Width | Plus count | Minus count | Count ratio | Normalised sample to control ratio | Percent id to HPRT1 Cas12a | Break site probability scores |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrX | 134498435 | 134498481 | 254 | frequency-based,homology-based | HPRT1_Cas12a | 3/3 | 87 | 86 | 81 | 0 | HPRT1 | 46 | 143 | 111 | 1.29 | 100.0 | 100.00 | ||
| chr1 | 145996844 | 145996853 | 6 | frequency-based | 3/3 | 2 | 2 | 2 | GA-rich | 9 | 2 | 4 | 2.00 | 48.0 | 0.00 | ||||
| chr3 | 13648379 | 13648386 | 6 | frequency-based | 3/3 | 3 | 1 | 2 | 7 | 3 | 3 | 1.00 | 44.0 | 0.00 | |||||
| chr16 | 30628965 | 30628977 | 6 | frequency-based | 3/3 | 3 | 2 | 1 | MIRb | 12 | 1 | 5 | 5.00 | 48.0 | 0.00 | ||||
| chr17 | 50372936 | 50372944 | 6 | frequency-based | 3/3 | 2 | 1 | 3 | MRPL27 | 8 | 5 | 1 | 5.00 | 40.0 | 0.00 |
Breaksite Plots
Mismatch Plots
HPRT1_Cas12a_4h HPRT1_Cas12a
HPRT1_Cas12a_8h
Nominations
| Chr | Start | End | Count | Rationale | Guide name | Reproducibility | Count (HPRT1 cas12a 8h rep1) | Count (HPRT1 cas12a 8h rep2) | Count (HPRT1 cas12a 8h rep3) | HPRT1 Cas12a mismatches | Intersect with genes | Intersect with repeat mask | Width | Plus count | Minus count | Count ratio | Normalised sample to control ratio | Percent id to HPRT1 Cas12a | Break site probability scores |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrX | 134498436 | 134498483 | 89 | frequency-based,homology-based | HPRT1_Cas12a | 3/3 | 24 | 35 | 30 | 0 | HPRT1 | 47 | 53 | 36 | 1.47 | 100.0 | 100.00 | ||
| chr6 | 41368968 | 41368978 | 5 | frequency-based | 2/3 | 3 | 2 | 0 | MIRb | 10 | 3 | 2 | 1.50 | 40.0 | 0.00 | ||||
| chr6 | 43722383 | 43722394 | 5 | frequency-based | 2/3 | 3 | 0 | 2 | MLT1N2 | 11 | 3 | 2 | 1.50 | 44.0 | 0.00 | ||||
| chr6 | 71080352 | 71080359 | 5 | frequency-based | 2/3 | 2 | 0 | 3 | MIRc,MIR | 7 | 2 | 3 | 1.50 | 44.0 | 0.00 | ||||
| chr10 | 67116230 | 67116238 | 5 | frequency-based | 2/3 | 0 | 2 | 3 | CTNNA3 | 8 | 0 | 5 | 52.0 | 0.00 | |||||
| chr17 | 60638967 | 60638969 | 5 | frequency-based | 3/3 | 2 | 2 | 1 | PPM1D | L2c | 2 | 5 | 0 | 52.0 | 0.00 | ||||
| chr22 | 37817751 | 37817755 | 5 | frequency-based | 2/3 | 1 | 4 | 0 | 4 | 2 | 3 | 1.50 | 52.0 | 0.00 | |||||
| chrX | 40945537 | 40945540 | 5 | frequency-based | 2/3 | 0 | 1 | 4 | 3 | 3 | 2 | 1.50 | 40.0 | 0.00 |
Breaksite Plots
Mismatch Plots
HPRT1_Cas12a_8h HPRT1_Cas12a
HPRT1_Custom_4h
Nominations
| Chr | Start | End | Count | Rationale | Guide name | Reproducibility | Count (HPRT1 custom 4h rep1) | Count (HPRT1 custom 4h rep2) | Count (HPRT1 custom 4h rep3) | HPRT1 Custom mismatches | Intersect with genes | Intersect with repeat mask | Width | Plus count | Minus count | Count ratio | Normalised sample to control ratio | Percent id to HPRT1 Custom | Break site probability scores |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrX | 134498435 | 134498481 | 254 | frequency-based,homology-based | HPRT1_Custom | 3/3 | 87 | 86 | 81 | 0 | HPRT1 | 46 | 143 | 111 | 1.29 | 100.0 | 100.00 | ||
| chr1 | 145996828 | 145996853 | 8 | frequency-based | 3/3 | 3 | 2 | 3 | GA-rich | 25 | 2 | 6 | 3.00 | 48.0 | 0.00 | ||||
| chr1 | 66726208 | 66726223 | 6 | frequency-based | 2/3 | 0 | 5 | 1 | SGIP1 | LTR41 | 15 | 4 | 2 | 2.00 | 48.0 | 0.00 | |||
| chr1 | 225446100 | 225446118 | 6 | frequency-based | 2/3 | 0 | 1 | 5 | 18 | 3 | 3 | 1.00 | 44.0 | 0.00 | |||||
| chr3 | 13648379 | 13648386 | 6 | frequency-based | 3/3 | 3 | 1 | 2 | 7 | 3 | 3 | 1.00 | 44.0 | 0.00 | |||||
| chr6 | 114096701 | 114096719 | 6 | frequency-based | 3/3 | 3 | 2 | 1 | HDAC2-AS2,HS3ST5 | 18 | 4 | 2 | 2.00 | 52.0 | 0.00 | ||||
| chr16 | 30628965 | 30628977 | 6 | frequency-based | 3/3 | 3 | 2 | 1 | MIRb | 12 | 1 | 5 | 5.00 | 48.0 | 0.00 | ||||
| chr17 | 50372936 | 50372944 | 6 | frequency-based | 3/3 | 2 | 1 | 3 | MRPL27 | 8 | 5 | 1 | 5.00 | 40.0 | 0.00 | ||||
| chr19 | 55166589 | 55166606 | 6 | frequency-based | 2/3 | 0 | 4 | 2 | DNAAF3,DNAAF3-AS1 | 17 | 6 | 0 | 44.0 | 0.00 | |||||
| chr19 | 57104192 | 57104215 | 6 | frequency-based | 2/3 | 0 | 4 | 2 | (GTTTT)n | 23 | 3 | 3 | 1.00 | 44.0 | 0.00 | ||||
| chrX | 101626295 | 101626296 | 1 | homology-based | HPRT1_Custom | 1/3 | 0 | 1 | 0 | 3 | ARMCX3 | 1 | 0 | 1 | 88.0 | 0.00 |
Breaksite Plots
Mismatch Plots
HPRT1_Custom_4h HPRT1_Custom
HPRT1_Custom_Discovery_4h
Nominations
| Chr | Start | End | Count | Rationale | Guide name | Reproducibility | Count (HPRT1 custom discovery 4h rep1) | Count (HPRT1 custom discovery 4h rep2) | Count (HPRT1 custom discovery 4h rep3) | HPRT1 Custom Discovery mismatches | Intersect with genes | Intersect with repeat mask | Width | Plus count | Minus count | Count ratio | Normalised sample to control ratio | Percent id to HPRT1 Custom Discovery | Break site probability scores |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrX | 134498448 | 134498472 | 244 | frequency-based,homology-based | HPRT1_Custom_Discovery | 3/3 | 86 | 79 | 79 | 0 | HPRT1 | 24 | 139 | 105 | 1.32 | 100.0 | 100.00 | ||
| chrX | 134498476 | 134498481 | 4 | homology-based | HPRT1_Custom_Discovery | 3/3 | 1 | 1 | 2 | 0 | HPRT1 | 5 | 4 | 0 | 100.0 | 0.00 | |||
| chr2 | 195544747 | 195544748 | 2 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 2 | 0 | 6 | 1 | 2 | 0 | 76.0 | 0.00 | ||||
| chr2 | 223047127 | 223047128 | 2 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 0 | 2 | 6 | MIR | 1 | 0 | 2 | 76.0 | 0.00 | |||
| chr6 | 72239707 | 72239708 | 2 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 0 | 2 | 5 | RIMS1 | 1 | 0 | 2 | 72.0 | 0.00 | |||
| chr11 | 92935593 | 92935595 | 2 | homology-based | HPRT1_Custom_Discovery | 2/3 | 1 | 0 | 1 | 6 | LTR64 | 2 | 0 | 2 | 76.0 | 0.00 | |||
| chr12 | 102994516 | 102994517 | 2 | homology-based | HPRT1_Custom_Discovery | 2/3 | 1 | 1 | 0 | 6 | L1ME1 | 1 | 2 | 0 | 76.0 | 0.00 | |||
| chr14 | 49151782 | 49151784 | 2 | homology-based | HPRT1_Custom_Discovery | 2/3 | 1 | 0 | 1 | 6 | L2c | 2 | 0 | 2 | 76.0 | 0.00 | |||
| chr19 | 54194456 | 54194457 | 2 | homology-based | HPRT1_Custom_Discovery | 2/3 | 1 | 1 | 0 | 6 | TSEN34 | 1 | 2 | 0 | 76.0 | 0.00 | |||
| chr1 | 61121179 | 61121180 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 1 | 0 | 6 | NFIA | 1 | 1 | 0 | 76.0 | 0.00 | |||
| chr1 | 61121184 | 61121185 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 0 | 1 | 6 | NFIA | 1 | 0 | 1 | 76.0 | 0.00 | |||
| chr1 | 223652426 | 223652427 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 0 | 1 | 6 | CAPN8 | 1 | 0 | 1 | 48.0 | 0.00 | |||
| chr1 | 223652439 | 223652440 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 1 | 0 | 0 | 6 | CAPN8 | 1 | 0 | 1 | 76.0 | 0.00 | |||
| chr2 | 172593448 | 172593449 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 0 | 1 | 6 | PDK1 | Tigger13a | 1 | 0 | 1 | 48.0 | 0.00 | ||
| chr2 | 172593454 | 172593455 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 1 | 0 | 0 | 6 | PDK1 | Tigger13a | 1 | 0 | 1 | 76.0 | 0.00 | ||
| chr2 | 172593467 | 172593468 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 1 | 0 | 0 | 6 | PDK1 | Tigger13a | 1 | 1 | 0 | 76.0 | 0.00 | ||
| chr2 | 195544738 | 195544739 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 0 | 1 | 6 | 1 | 0 | 1 | 76.0 | 0.00 | ||||
| chr4 | 79881638 | 79881639 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 0 | 1 | 6 | 1 | 0 | 1 | 76.0 | 0.00 | ||||
| chr4 | 79881644 | 79881645 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 1 | 0 | 0 | 6 | 1 | 1 | 0 | 76.0 | 0.00 | ||||
| chr4 | 102023956 | 102023957 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 0 | 1 | 6 | BANK1,ENSG00000251309 | 1 | 0 | 1 | 76.0 | 0.00 | |||
| chr4 | 102023962 | 102023963 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 1 | 0 | 6 | BANK1,ENSG00000251309 | 1 | 0 | 1 | 52.0 | 0.00 | |||
| chr5 | 83068851 | 83068852 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 1 | 0 | 0 | 6 | TMEM167A | 1 | 0 | 1 | 76.0 | 0.00 | |||
| chr5 | 83068857 | 83068858 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 1 | 0 | 6 | TMEM167A | 1 | 1 | 0 | 76.0 | 0.00 | |||
| chr6 | 36339099 | 36339100 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 1 | 0 | 0 | 6 | L1MB3 | 1 | 0 | 1 | 76.0 | 0.00 | |||
| chr6 | 36339105 | 36339106 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 1 | 0 | 6 | L1MB3 | 1 | 1 | 0 | 76.0 | 0.00 | |||
| chr6 | 72239704 | 72239705 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 1 | 0 | 0 | 5 | RIMS1 | 1 | 0 | 1 | 80.0 | 0.00 | |||
| chr7 | 108318430 | 108318431 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 0 | 1 | 5 | NRCAM | MER5A | 1 | 0 | 1 | 60.0 | 0.00 | ||
| chr7 | 108318462 | 108318463 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 1 | 0 | 0 | 5 | NRCAM | MER5A | 1 | 0 | 1 | 56.0 | 0.00 | ||
| chr9 | 28923189 | 28923190 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 0 | 1 | 4 | LINGO2 | MLT1D | 1 | 0 | 1 | 84.0 | 0.00 | ||
| chr11 | 15195040 | 15195041 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 1 | 0 | 0 | 6 | INSC | MER5B | 1 | 0 | 1 | 76.0 | 0.00 | ||
| chr11 | 15195052 | 15195053 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 1 | 0 | 0 | 6 | INSC | MER5B | 1 | 1 | 0 | 76.0 | 0.00 | ||
| chr11 | 90449334 | 90449335 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 1 | 0 | 6 | DISC1FP1 | 1 | 0 | 1 | 76.0 | 0.00 | |||
| chr11 | 90449338 | 90449339 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 1 | 0 | 6 | DISC1FP1 | 1 | 0 | 1 | 72.0 | 0.00 | |||
| chr13 | 38230704 | 38230705 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 1 | 0 | 0 | 6 | LINC00571 | L1PA11 | 1 | 0 | 1 | 76.0 | 0.00 | ||
| chr13 | 38230707 | 38230708 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 1 | 0 | 6 | LINC00571 | L1PA11 | 1 | 1 | 0 | 76.0 | 0.00 | ||
| chr17 | 61104009 | 61104010 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 1 | 0 | 6 | BCAS3 | 1 | 0 | 1 | 76.0 | 0.00 | |||
| chr17 | 61104017 | 61104018 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 1 | 0 | 6 | BCAS3 | 1 | 1 | 0 | 76.0 | 0.00 | |||
| chr18 | 5207757 | 5207758 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 0 | 1 | 6 | ENSG00000285575 | 1 | 1 | 0 | 76.0 | 0.00 | |||
| chr18 | 5207775 | 5207776 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 0 | 1 | 6 | ENSG00000285575 | 1 | 1 | 0 | 76.0 | 0.00 | |||
| chr21 | 21736153 | 21736154 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 0 | 1 | 4 | LINC00317 | 1 | 0 | 1 | 84.0 | 0.00 | |||
| chrX | 101626295 | 101626296 | 1 | homology-based | HPRT1_Custom_Discovery | 1/3 | 0 | 1 | 0 | 3 | ARMCX3 | 1 | 0 | 1 | 88.0 | 0.00 |
Breaksite Plots
Mismatch Plots
HPRT1_Custom_Discovery_4h HPRT1_Custom_Discovery
asisi_treated
Nominations
| Chr | Start | End | Count | Rationale | Guide name | Reproducibility | Count (asisi digested rep1) | Count (asisi digested rep2) | Count (asisi digested rep3) | Asisi mismatches | Intersect with genes | Intersect with repeat mask | Width | Plus count | Minus count | Count ratio | Percent id to asisi |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr17 | 82292965 | 82292972 | 125 | frequency-based,homology-based | asisi | 3/3 | 53 | 32 | 40 | 0 | MLT1K | 7 | 42 | 83 | 1.98 | 100.0 | |
| chr17 | 59106936 | 59106940 | 124 | frequency-based,homology-based | asisi | 3/3 | 40 | 34 | 50 | 0 | TRIM37,ENSG00000224738 | G-rich | 4 | 60 | 64 | 1.07 | 100.0 |
| chr1 | 88992914 | 88992920 | 116 | frequency-based,homology-based | asisi | 3/3 | 36 | 43 | 37 | 0 | KYAT3,RBMXL1 | 6 | 61 | 55 | 1.11 | 100.0 | |
| chr2 | 68157617 | 68157622 | 104 | frequency-based,homology-based | asisi | 3/3 | 29 | 41 | 34 | 0 | ENSG00000273398 | 5 | 55 | 49 | 1.12 | 100.0 | |
| chr9 | 127930892 | 127930896 | 80 | frequency-based,homology-based | asisi | 3/3 | 29 | 30 | 21 | 0 | 4 | 37 | 43 | 1.16 | 100.0 | ||
| chr20 | 43458478 | 43458482 | 78 | frequency-based,homology-based | asisi | 3/3 | 33 | 29 | 16 | 0 | SRSF6,ENSG00000288000 | 4 | 36 | 42 | 1.17 | 100.0 | |
| chr22 | 38468096 | 38468101 | 75 | frequency-based,homology-based | asisi | 3/3 | 29 | 27 | 19 | 0 | KDELR3 | 5 | 36 | 39 | 1.08 | 100.0 | |
| chr20 | 32358509 | 32358514 | 74 | frequency-based,homology-based | asisi | 3/3 | 20 | 27 | 27 | 0 | ASXL1 | (GCC)n | 5 | 19 | 55 | 2.89 | 100.0 |
| chr1 | 40508972 | 40508976 | 69 | frequency-based,homology-based | asisi | 3/3 | 22 | 22 | 25 | 0 | EXO5 | 4 | 37 | 32 | 1.16 | 100.0 | |
| chr18 | 7566715 | 7566719 | 68 | frequency-based,homology-based | asisi | 3/3 | 13 | 24 | 31 | 0 | 4 | 19 | 49 | 2.58 | 100.0 | ||
| chr18 | 21740841 | 21740848 | 68 | frequency-based,homology-based | asisi | 3/3 | 23 | 17 | 28 | 0 | MIB1 | 7 | 31 | 37 | 1.19 | 100.0 | |
| chr1 | 109494078 | 109494082 | 67 | frequency-based,homology-based | asisi | 3/3 | 22 | 30 | 15 | 0 | CYB561D1 | 4 | 40 | 27 | 1.48 | 100.0 | |
| chr3 | 99818120 | 99818126 | 67 | frequency-based,homology-based | asisi | 3/3 | 25 | 22 | 20 | 0 | CMSS1 | 6 | 36 | 31 | 1.16 | 100.0 | |
| chr6 | 31137651 | 31137655 | 60 | frequency-based,homology-based | asisi | 3/3 | 15 | 18 | 27 | 0 | PSORS1C1,PSORS1C2 | 4 | 32 | 28 | 1.14 | 100.0 | |
| chr17 | 21042988 | 21042992 | 59 | frequency-based,homology-based | asisi | 3/3 | 21 | 22 | 16 | 0 | USP22 | 4 | 32 | 27 | 1.19 | 100.0 | |
| chr1 | 19485661 | 19485665 | 58 | frequency-based,homology-based | asisi | 3/3 | 19 | 24 | 15 | 0 | MICOS10 | (GCGGC)n | 4 | 34 | 24 | 1.42 | 100.0 |
| chr2 | 119366990 | 119366994 | 57 | frequency-based,homology-based | asisi | 3/3 | 21 | 16 | 20 | 0 | DBI | 4 | 34 | 23 | 1.48 | 100.0 | |
| chr6 | 89638468 | 89638472 | 56 | frequency-based,homology-based | asisi | 3/3 | 14 | 20 | 22 | 0 | LYRM2 | 4 | 27 | 29 | 1.07 | 100.0 | |
| chr17 | 63773496 | 63773500 | 56 | frequency-based,homology-based | asisi | 3/3 | 19 | 12 | 25 | 0 | CCDC47 | 4 | 34 | 22 | 1.55 | 100.0 | |
| chr19 | 45428822 | 45428826 | 54 | frequency-based,homology-based | asisi | 3/3 | 16 | 17 | 21 | 0 | ERCC1 | 4 | 28 | 26 | 1.08 | 100.0 | |
| chr7 | 4682499 | 4682503 | 53 | frequency-based,homology-based | asisi | 3/3 | 19 | 20 | 14 | 0 | FOXK1 | 4 | 21 | 32 | 1.52 | 100.0 | |
| chr5 | 143405485 | 143405489 | 52 | frequency-based,homology-based | asisi | 3/3 | 18 | 11 | 23 | 0 | NR3C1 | 4 | 16 | 36 | 2.25 | 100.0 | |
| chr17 | 5486901 | 5486905 | 51 | frequency-based,homology-based | asisi | 3/3 | 19 | 15 | 17 | 0 | MIS12 | 4 | 23 | 28 | 1.22 | 100.0 | |
| chr2 | 85595471 | 85595475 | 47 | frequency-based,homology-based | asisi | 3/3 | 18 | 16 | 13 | 0 | ENSG00000288858 | 4 | 22 | 25 | 1.14 | 100.0 | |
| chr21 | 31873202 | 31873210 | 47 | frequency-based,homology-based | asisi | 3/3 | 13 | 16 | 18 | 0 | HUNK | (CGG)n | 8 | 17 | 30 | 1.76 | 100.0 |
| chr9 | 36258515 | 36258521 | 46 | frequency-based,homology-based | asisi | 3/3 | 16 | 22 | 8 | 0 | CLTA,GNE | 6 | 19 | 27 | 1.42 | 100.0 | |
| chr11 | 24496930 | 24496934 | 46 | frequency-based,homology-based | asisi | 3/3 | 17 | 12 | 17 | 0 | LUZP2 | 4 | 21 | 25 | 1.19 | 100.0 | |
| chr4 | 83013134 | 83013138 | 45 | frequency-based,homology-based | asisi | 3/3 | 19 | 17 | 9 | 0 | 4 | 28 | 17 | 1.65 | 100.0 | ||
| chr20 | 38731626 | 38731630 | 45 | frequency-based,homology-based | asisi | 3/3 | 16 | 14 | 15 | 0 | 4 | 30 | 15 | 2.00 | 100.0 | ||
| chr5 | 69167024 | 69167028 | 44 | frequency-based,homology-based | asisi | 3/3 | 17 | 12 | 15 | 0 | 4 | 24 | 20 | 1.20 | 100.0 | ||
| chr6 | 37354036 | 37354040 | 42 | frequency-based,homology-based | asisi | 3/3 | 18 | 8 | 16 | 0 | RNF8 | 4 | 17 | 25 | 1.47 | 100.0 | |
| chrX | 73563267 | 73563271 | 42 | frequency-based,homology-based | asisi | 3/3 | 9 | 14 | 19 | 0 | CHIC1 | 4 | 17 | 25 | 1.47 | 100.0 | |
| chr3 | 52198147 | 52198154 | 40 | frequency-based,homology-based | asisi | 3/3 | 10 | 9 | 21 | 0 | ALAS1 | 7 | 25 | 15 | 1.67 | 100.0 | |
| chr6 | 135498210 | 135498214 | 39 | frequency-based,homology-based | asisi | 3/3 | 12 | 13 | 14 | 0 | AHI1,AHI1-DT | 4 | 19 | 20 | 1.05 | 100.0 | |
| chr8 | 115668405 | 115668412 | 37 | frequency-based,homology-based | asisi | 3/3 | 13 | 14 | 10 | 0 | TRPS1 | (T)n,(CGCGCCC)n | 7 | 23 | 14 | 1.64 | 100.0 |
| chr21 | 44801875 | 44801879 | 37 | frequency-based,homology-based | asisi | 3/3 | 8 | 19 | 10 | 0 | UBE2G2,LINC01424 | 4 | 19 | 18 | 1.06 | 100.0 | |
| chr2 | 74507635 | 74507639 | 36 | frequency-based,homology-based | asisi | 3/3 | 5 | 13 | 18 | 0 | PCGF1 | 4 | 26 | 10 | 2.60 | 100.0 | |
| chr19 | 29528579 | 29528585 | 36 | frequency-based,homology-based | asisi | 3/3 | 9 | 13 | 14 | 0 | VSTM2B | 6 | 14 | 22 | 1.57 | 100.0 | |
| chrX | 45507149 | 45507153 | 36 | frequency-based,homology-based | asisi | 3/3 | 10 | 13 | 13 | 0 | LINC01204 | 4 | 27 | 9 | 3.00 | 100.0 | |
| chr13 | 114129184 | 114129188 | 34 | frequency-based,homology-based | asisi | 3/3 | 7 | 12 | 15 | 0 | RASA3 | 4 | 17 | 17 | 1.00 | 100.0 | |
| chr19 | 2456096 | 2456100 | 34 | frequency-based,homology-based | asisi | 3/3 | 6 | 15 | 13 | 0 | LMNB2 | 4 | 22 | 12 | 1.83 | 100.0 | |
| chr6 | 66994128 | 66994132 | 32 | frequency-based,homology-based | asisi | 3/3 | 9 | 12 | 11 | 0 | AluSc | 4 | 20 | 12 | 1.67 | 100.0 | |
| chr7 | 76178189 | 76178193 | 31 | frequency-based,homology-based | asisi | 3/3 | 10 | 9 | 12 | 0 | 4 | 18 | 13 | 1.38 | 100.0 | ||
| chrX | 53082245 | 53082249 | 30 | frequency-based,homology-based | asisi | 3/3 | 7 | 7 | 16 | 0 | 4 | 15 | 15 | 1.00 | 100.0 | ||
| chr14 | 52695639 | 52695643 | 29 | frequency-based,homology-based | asisi | 3/3 | 10 | 12 | 7 | 0 | ERO1A | 4 | 19 | 10 | 1.90 | 100.0 | |
| chr4 | 177442422 | 177442426 | 28 | frequency-based,homology-based | asisi | 3/3 | 6 | 7 | 15 | 0 | AGA | 4 | 18 | 10 | 1.80 | 100.0 | |
| chr20 | 20052281 | 20052285 | 28 | frequency-based,homology-based | asisi | 3/3 | 9 | 9 | 10 | 0 | CRNKL1 | 4 | 15 | 13 | 1.15 | 100.0 | |
| chr22 | 20496021 | 20496025 | 28 | frequency-based,homology-based | asisi | 3/3 | 12 | 7 | 9 | 0 | MED15 | 4 | 19 | 9 | 2.11 | 100.0 | |
| chr2 | 5697064 | 5697068 | 27 | frequency-based,homology-based | asisi | 3/3 | 8 | 8 | 11 | 0 | SOX11,ENSG00000242540 | 4 | 9 | 18 | 2.00 | 100.0 | |
| chr2 | 43131200 | 43131204 | 27 | frequency-based,homology-based | asisi | 3/3 | 3 | 16 | 8 | 0 | LINC02580,ENSG00000286796 | 4 | 23 | 4 | 5.75 | 100.0 | |
| chr11 | 85664611 | 85664615 | 26 | frequency-based,homology-based | asisi | 3/3 | 8 | 9 | 9 | 0 | CREBZF | 4 | 17 | 9 | 1.89 | 100.0 | |
| chr19 | 41397838 | 41397842 | 26 | frequency-based,homology-based | asisi | 3/3 | 7 | 10 | 9 | 0 | ENSG00000255730,BCKDHA | 4 | 17 | 9 | 1.89 | 100.0 | |
| chr8 | 65634113 | 65634117 | 25 | frequency-based,homology-based | asisi | 3/3 | 6 | 9 | 10 | 0 | ARMC1 | 4 | 13 | 12 | 1.08 | 100.0 | |
| chr2 | 55281965 | 55281969 | 24 | frequency-based,homology-based | asisi | 3/3 | 11 | 5 | 8 | 0 | AluSx1 | 4 | 15 | 9 | 1.67 | 100.0 | |
| chr7 | 93232178 | 93232182 | 24 | frequency-based,homology-based | asisi | 3/3 | 7 | 7 | 10 | 0 | 4 | 10 | 14 | 1.40 | 100.0 | ||
| chr11 | 75814716 | 75814720 | 24 | frequency-based,homology-based | asisi | 3/3 | 7 | 9 | 8 | 0 | UVRAG-DT | 4 | 17 | 7 | 2.43 | 100.0 | |
| chr9 | 134326231 | 134326235 | 23 | frequency-based,homology-based | asisi | 3/3 | 7 | 2 | 14 | 0 | RXRA | 4 | 7 | 16 | 2.29 | 100.0 | |
| chr19 | 41993704 | 41993708 | 23 | frequency-based,homology-based | asisi | 3/3 | 11 | 6 | 6 | 0 | ENSG00000285505,ATP1A3 | 4 | 19 | 4 | 4.75 | 100.0 | |
| chr20 | 33444281 | 33444285 | 22 | frequency-based,homology-based | asisi | 3/3 | 7 | 9 | 6 | 0 | AluJb | 4 | 8 | 14 | 1.75 | 100.0 | |
| chr6 | 149566970 | 149566974 | 21 | frequency-based,homology-based | asisi | 3/3 | 7 | 7 | 7 | 0 | GINM1 | 4 | 10 | 11 | 1.10 | 100.0 | |
| chr7 | 100081885 | 100081889 | 21 | frequency-based,homology-based | asisi | 3/3 | 9 | 5 | 7 | 0 | ZNF3 | 4 | 10 | 11 | 1.10 | 100.0 | |
| chr13 | 104586201 | 104586205 | 21 | frequency-based,homology-based | asisi | 3/3 | 6 | 9 | 6 | 0 | 4 | 9 | 12 | 1.33 | 100.0 | ||
| chr5 | 80488321 | 80488325 | 20 | frequency-based,homology-based | asisi | 3/3 | 4 | 7 | 9 | 0 | FAM151B | 4 | 13 | 7 | 1.86 | 100.0 | |
| chr6 | 144286433 | 144286437 | 20 | frequency-based,homology-based | asisi | 3/3 | 9 | 6 | 5 | 0 | UTRN | 4 | 13 | 7 | 1.86 | 100.0 | |
| chr17 | 39981220 | 39981224 | 20 | frequency-based,homology-based | asisi | 3/3 | 11 | 3 | 6 | 0 | PSMD3 | 4 | 9 | 11 | 1.22 | 100.0 | |
| chr1 | 9589388 | 9589392 | 19 | frequency-based,homology-based | asisi | 3/3 | 9 | 5 | 5 | 0 | TMEM201 | 4 | 9 | 10 | 1.11 | 100.0 | |
| chr9 | 29212802 | 29212808 | 19 | frequency-based,homology-based | asisi | 3/3 | 8 | 3 | 8 | 0 | LINGO2 | 6 | 8 | 11 | 1.38 | 100.0 | |
| chr12 | 121537153 | 121537157 | 19 | frequency-based,homology-based | asisi | 3/3 | 7 | 7 | 5 | 0 | KDM2B | 4 | 11 | 8 | 1.38 | 100.0 | |
| chr17 | 44363567 | 44363571 | 19 | frequency-based,homology-based | asisi | 3/3 | 8 | 7 | 4 | 0 | FAM171A2 | 4 | 8 | 11 | 1.38 | 100.0 | |
| chr20 | 1226972 | 1226976 | 18 | frequency-based,homology-based | asisi | 3/3 | 4 | 9 | 5 | 0 | RAD21L1 | AluSx1 | 4 | 9 | 9 | 1.00 | 100.0 |
| chr1 | 109984953 | 109984957 | 17 | frequency-based,homology-based | asisi | 3/3 | 4 | 4 | 9 | 0 | AHCYL1 | 4 | 10 | 7 | 1.43 | 100.0 | |
| chr2 | 207166004 | 207166005 | 17 | frequency-based,homology-based | asisi | 3/3 | 4 | 5 | 8 | 0 | KLF7 | (C)n | 1 | 0 | 17 | 100.0 | |
| chr6 | 49949873 | 49949874 | 17 | frequency-based,homology-based | asisi | 3/3 | 7 | 5 | 5 | 0 | ENSG00000290804 | AluY | 1 | 17 | 0 | 100.0 | |
| chr9 | 124769827 | 124769831 | 17 | frequency-based,homology-based | asisi | 3/3 | 8 | 4 | 5 | 0 | NR6A1 | 4 | 8 | 9 | 1.12 | 100.0 | |
| chr19 | 2456598 | 2456602 | 17 | frequency-based,homology-based | asisi | 3/3 | 6 | 5 | 6 | 0 | LMNB2 | 4 | 9 | 8 | 1.12 | 100.0 | |
| chr1 | 228140380 | 228140384 | 16 | frequency-based,homology-based | asisi | 3/3 | 5 | 4 | 7 | 0 | GUK1 | 4 | 8 | 8 | 1.00 | 100.0 | |
| chr3 | 98899324 | 98899325 | 16 | frequency-based,homology-based | asisi | 3/3 | 5 | 6 | 5 | 0 | DCBLD2 | AluSc8 | 1 | 16 | 0 | 100.0 | |
| chr1 | 204411325 | 204411329 | 15 | frequency-based,homology-based | asisi | 3/3 | 3 | 6 | 6 | 0 | PPP1R15B-AS1,PPP1R15B,ENSG00000288934 | 4 | 8 | 7 | 1.14 | 100.0 | |
| chr3 | 196868111 | 196868115 | 15 | frequency-based,homology-based | asisi | 3/3 | 3 | 5 | 7 | 0 | SENP5 | 4 | 10 | 5 | 2.00 | 100.0 | |
| chrX | 48957422 | 48957426 | 15 | frequency-based,homology-based | asisi | 3/3 | 2 | 4 | 9 | 0 | OTUD5 | (CGC)n | 4 | 5 | 10 | 2.00 | 100.0 |
| chrX | 150693993 | 150693997 | 15 | frequency-based,homology-based | asisi | 3/3 | 4 | 6 | 5 | 0 | MTMR1 | 4 | 4 | 11 | 2.75 | 100.0 | |
| chr5 | 180292535 | 180292539 | 14 | frequency-based,homology-based | asisi | 3/3 | 4 | 4 | 6 | 0 | ENSG00000248367 | 4 | 6 | 8 | 1.33 | 100.0 | |
| chr12 | 129607336 | 129607340 | 14 | frequency-based,homology-based | asisi | 3/3 | 4 | 7 | 3 | 0 | TMEM132D | MER77 | 4 | 5 | 9 | 1.80 | 100.0 |
| chr14 | 54489107 | 54489109 | 14 | frequency-based,homology-based | asisi | 3/3 | 3 | 6 | 5 | 0 | (T)n | 2 | 0 | 14 | 100.0 | ||
| chr15 | 58933091 | 58933095 | 14 | frequency-based,homology-based | asisi | 3/3 | 5 | 6 | 3 | 0 | RNF111,SLTM | 4 | 11 | 3 | 3.67 | 100.0 | |
| chr18 | 32018760 | 32018764 | 14 | frequency-based,homology-based | asisi | 3/3 | 7 | 3 | 4 | 0 | 4 | 7 | 7 | 1.00 | 100.0 | ||
| chr1 | 230868488 | 230868489 | 13 | frequency-based,homology-based | asisi | 3/3 | 4 | 4 | 5 | 0 | C1orf198,ENSG00000223393 | 1 | 0 | 13 | 100.0 | ||
| chr8 | 31640323 | 31640327 | 13 | frequency-based,homology-based | asisi | 3/3 | 5 | 4 | 4 | 0 | NRG1 | (GCG)n,(GCCGCGA)n | 4 | 9 | 4 | 2.25 | 100.0 |
| chr9 | 128127129 | 128127133 | 13 | frequency-based,homology-based | asisi | 3/3 | 5 | 5 | 3 | 0 | PTGES2 | AluJb | 4 | 6 | 7 | 1.17 | 100.0 |
| chr10 | 92291258 | 92291262 | 13 | frequency-based,homology-based | asisi | 3/3 | 4 | 6 | 3 | 0 | MARCHF5 | 4 | 3 | 10 | 3.33 | 100.0 | |
| chr2 | 70767416 | 70767420 | 12 | frequency-based,homology-based | asisi | 3/3 | 4 | 6 | 2 | 0 | ADD2 | (CGCCC)n | 4 | 5 | 7 | 1.40 | 100.0 |
| chr4 | 2058959 | 2058963 | 12 | frequency-based,homology-based | asisi | 3/3 | 5 | 4 | 3 | 0 | G-rich | 4 | 4 | 8 | 2.00 | 100.0 | |
| chr6 | 20212090 | 20212094 | 12 | frequency-based,homology-based | asisi | 3/3 | 2 | 3 | 7 | 0 | MBOAT1,ENSG00000227803 | 4 | 9 | 3 | 3.00 | 100.0 | |
| chr8 | 22565959 | 22565963 | 12 | frequency-based,homology-based | asisi | 3/3 | 4 | 6 | 2 | 0 | SORBS3,ENSG00000254230 | 4 | 7 | 5 | 1.40 | 100.0 | |
| chr8 | 123768970 | 123768974 | 12 | frequency-based,homology-based | asisi | 3/3 | 2 | 6 | 4 | 0 | FAM91A1 | 4 | 7 | 5 | 1.40 | 100.0 | |
| chr9 | 109780072 | 109780076 | 12 | frequency-based,homology-based | asisi | 3/3 | 1 | 4 | 7 | 0 | PALM2AKAP2 | 4 | 5 | 7 | 1.40 | 100.0 | |
| chr11 | 100687581 | 100687585 | 12 | frequency-based,homology-based | asisi | 3/3 | 4 | 2 | 6 | 0 | ARHGAP42-AS1,ARHGAP42 | 4 | 6 | 6 | 1.00 | 100.0 | |
| chr17 | 4366229 | 4366233 | 12 | frequency-based,homology-based | asisi | 3/3 | 7 | 1 | 4 | 0 | UBE2G1 | 4 | 9 | 3 | 3.00 | 100.0 | |
| chr17 | 82273235 | 82273240 | 12 | frequency-based,homology-based | asisi | 3/3 | 4 | 5 | 3 | 0 | CSNK1D | 5 | 6 | 6 | 1.00 | 100.0 | |
| chr19 | 38336687 | 38336691 | 12 | frequency-based,homology-based | asisi | 3/3 | 4 | 1 | 7 | 0 | CATSPERG | 4 | 8 | 4 | 2.00 | 100.0 |
Breaksite Plots
Mismatch Plots
asisi_treated asisi
srfi_noti_treated
Nominations
| Chr | Start | End | Count | Rationale | Guide name | Reproducibility | Count (noti and srfi digested rep1) | Count (noti and srfi digested rep2) | Count (noti and srfi digested rep3) | Noti mismatches | Srfi mismatches | Intersect with genes | Intersect with repeat mask | Width | Plus count | Minus count | Count ratio | Percent id to noti | Percent id to srfi |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr2 | 69914897 | 69914902 | 1247 | frequency-based,homology-based | srfi | 3/3 | 389 | 401 | 457 | 0 | MXD1 | 5 | 641 | 606 | 1.06 | 62.5 | 100.0 | ||
| chr19 | 55605463 | 55605466 | 1183 | frequency-based,homology-based | srfi | 3/3 | 352 | 371 | 460 | 0 | 3 | 707 | 476 | 1.49 | 75.0 | 100.0 | |||
| chr5 | 73565405 | 73565408 | 1061 | frequency-based,homology-based | srfi | 3/3 | 328 | 352 | 381 | 0 | ANKRA2,UTP15 | 3 | 646 | 415 | 1.56 | 75.0 | 100.0 | ||
| chr17 | 44186688 | 44186690 | 1059 | frequency-based,homology-based | srfi | 3/3 | 339 | 347 | 373 | 0 | ASB16-AS1 | 2 | 627 | 432 | 1.45 | 75.0 | 100.0 | ||
| chr2 | 85354575 | 85354584 | 1057 | frequency-based,homology-based | srfi | 3/3 | 303 | 353 | 401 | 0 | RETSAT,ELMOD3 | 9 | 720 | 337 | 2.14 | 62.5 | 100.0 | ||
| chr9 | 137255162 | 137255164 | 1049 | frequency-based,homology-based | srfi | 3/3 | 299 | 367 | 383 | 0 | 2 | 419 | 630 | 1.50 | 75.0 | 100.0 | |||
| chr12 | 104958386 | 104958394 | 1024 | frequency-based,homology-based | srfi | 3/3 | 301 | 340 | 383 | 0 | SLC41A2 | 8 | 437 | 587 | 1.34 | 87.5 | 100.0 | ||
| chr19 | 1249740 | 1249745 | 1017 | frequency-based,homology-based | srfi | 3/3 | 291 | 322 | 404 | 0 | MIDN | 5 | 611 | 406 | 1.50 | 87.5 | 100.0 | ||
| chr11 | 73761105 | 73761110 | 1012 | frequency-based,homology-based | srfi | 3/3 | 288 | 333 | 391 | 0 | RAB6A,ENSG00000256034 | (GCGT)n | 5 | 463 | 549 | 1.19 | 87.5 | 100.0 | |
| chr12 | 56688316 | 56688319 | 995 | frequency-based,homology-based | srfi | 3/3 | 311 | 320 | 364 | 0 | PTGES3 | 3 | 492 | 503 | 1.02 | 87.5 | 100.0 | ||
| chr9 | 132355122 | 132355137 | 986 | frequency-based,homology-based | noti | 3/3 | 286 | 329 | 371 | 0 | 15 | 430 | 556 | 1.29 | 100.0 | 75.0 | |||
| chr11 | 66313007 | 66313010 | 981 | frequency-based,homology-based | srfi | 3/3 | 293 | 321 | 367 | 0 | ENSG00000289560,ENSG00000254458 | 3 | 454 | 527 | 1.16 | 62.5 | 100.0 | ||
| chr2 | 218568464 | 218568468 | 970 | frequency-based,homology-based | srfi | 3/3 | 295 | 308 | 367 | 0 | (CCGCC)n | 4 | 381 | 589 | 1.55 | 75.0 | 100.0 | ||
| chr11 | 102347262 | 102347266 | 967 | frequency-based,homology-based | srfi | 3/3 | 320 | 318 | 329 | 0 | BIRC2 | 4 | 530 | 437 | 1.21 | 75.0 | 100.0 | ||
| chr9 | 128068133 | 128068137 | 964 | frequency-based,homology-based | srfi | 3/3 | 296 | 308 | 360 | 0 | NAIF1 | G-rich | 4 | 392 | 572 | 1.46 | 75.0 | 100.0 | |
| chr17 | 1456388 | 1456398 | 949 | frequency-based,homology-based | srfi | 3/3 | 294 | 328 | 327 | 0 | CRK | 10 | 472 | 477 | 1.01 | 75.0 | 100.0 | ||
| chr17 | 1516834 | 1516842 | 946 | frequency-based,homology-based | noti | 3/3 | 268 | 340 | 338 | 0 | PITPNA-AS1 | 8 | 382 | 564 | 1.48 | 100.0 | 87.5 | ||
| chr21 | 39312558 | 39312576 | 946 | frequency-based,homology-based | noti | 3/3 | 300 | 299 | 347 | 0 | BRWD1 | (GCCCC)n | 18 | 537 | 409 | 1.31 | 100.0 | 62.5 | |
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr17 | 81488002 | 81488018 | 937 | homology-based | noti,srfi | 3/3 | 296 | 299 | 342 | 0 | 0 | 16 | 484 | 453 | 1.07 | 100.0 | 100.0 | ||
| chr20 | 33686632 | 33686635 | 916 | homology-based | srfi | 3/3 | 256 | 313 | 347 | 0 | (GCGGC)n | 3 | 425 | 491 | 1.16 | 75.0 | 100.0 | ||
| chr7 | 157010830 | 157010832 | 915 | homology-based | srfi | 3/3 | 318 | 315 | 282 | 0 | MNX1-AS1 | (CCGCC)n | 2 | 403 | 512 | 1.27 | 62.5 | 100.0 | |
| chr7 | 138460126 | 138460138 | 913 | homology-based | noti | 3/3 | 281 | 301 | 331 | 0 | G-rich | 12 | 462 | 451 | 1.02 | 100.0 | 75.0 | ||
| chr12 | 117190503 | 117190505 | 912 | homology-based | srfi | 3/3 | 265 | 302 | 345 | 0 | FBXO21 | (CCG)n,(CG)n | 2 | 450 | 462 | 1.03 | 75.0 | 100.0 | |
| chr2 | 223957283 | 223957299 | 910 | homology-based | noti | 3/3 | 291 | 276 | 343 | 0 | 16 | 448 | 462 | 1.03 | 100.0 | 75.0 | |||
| chr14 | 20682832 | 20682834 | 909 | homology-based | srfi | 3/3 | 296 | 283 | 330 | 0 | 2 | 381 | 528 | 1.39 | 62.5 | 100.0 | |||
| chr11 | 85628508 | 85628510 | 893 | homology-based | srfi | 3/3 | 288 | 297 | 308 | 0 | 2 | 419 | 474 | 1.13 | 75.0 | 100.0 | |||
| chr11 | 72793728 | 72793739 | 879 | homology-based | noti | 3/3 | 276 | 250 | 353 | 0 | STARD10,ENSG00000285693 | 11 | 462 | 417 | 1.11 | 100.0 | 75.0 | ||
| chr15 | 64163292 | 64163294 | 879 | homology-based | srfi | 3/3 | 286 | 294 | 299 | 0 | 2 | 409 | 470 | 1.15 | 87.5 | 100.0 | |||
| chr1 | 62436278 | 62436280 | 878 | homology-based | srfi | 3/3 | 272 | 304 | 302 | 0 | USP1 | 2 | 502 | 376 | 1.34 | 75.0 | 100.0 | ||
| chr10 | 31760154 | 31760160 | 878 | homology-based | srfi | 3/3 | 284 | 262 | 332 | 0 | ENSG00000289412 | 6 | 486 | 392 | 1.24 | 62.5 | 100.0 | ||
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr11 | 65919098 | 65919117 | 868 | homology-based | noti | 3/3 | 247 | 286 | 335 | 0 | C11orf68 | G-rich | 19 | 486 | 382 | 1.27 | 100.0 | 75.0 | |
| chr7 | 76318194 | 76318208 | 853 | homology-based | noti | 3/3 | 258 | 249 | 346 | 0 | FPASL | 14 | 387 | 466 | 1.20 | 100.0 | 75.0 | ||
| chr17 | 31549959 | 31549963 | 848 | homology-based | srfi | 3/3 | 282 | 247 | 319 | 0 | (CGGGGC)n | 4 | 310 | 538 | 1.74 | 75.0 | 100.0 | ||
| chr15 | 65611261 | 65611263 | 847 | homology-based | srfi | 3/3 | 257 | 284 | 306 | 0 | INTS14 | 2 | 467 | 380 | 1.23 | 62.5 | 100.0 | ||
| chr3 | 12484434 | 12484442 | 843 | homology-based | noti | 3/3 | 267 | 271 | 305 | 0 | TSEN2 | 8 | 464 | 379 | 1.22 | 100.0 | 62.5 | ||
| chr10 | 97687418 | 97687420 | 838 | homology-based | srfi | 3/3 | 247 | 267 | 324 | 0 | 2 | 414 | 424 | 1.02 | 75.0 | 100.0 | |||
| chr16 | 70381403 | 70381416 | 836 | homology-based | noti | 3/3 | 244 | 276 | 316 | 0 | ST3GAL2,ENSG00000260111 | 13 | 365 | 471 | 1.29 | 100.0 | 75.0 | ||
| chr19 | 45717433 | 45717445 | 835 | homology-based | noti | 3/3 | 270 | 269 | 296 | 0 | FBXO46 | 12 | 390 | 445 | 1.14 | 100.0 | 75.0 |
Breaksite Plots
Mismatch Plots
srfi_noti_treated noti
srfi_noti_treated srfi
Workflow Warnings and Errors
Note
No errors found